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IT Applications Manager

Select Custom Solutions (SCS) · La Crosse, Wisconsin

OnsiteFull-timeDirect from the employer

Posted Oct 5, 2026 · Verified open Oct 9, 2026

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About the job

Shape What’s Next at Select Custom Solutions

At Select Custom Solutions, we don’t just make ingredients—we create possibilities. From La Crosse, WI, our team brings innovation and expertise to contract manufacturing, branded dairy and non-dairy ingredients, custom blends, and ingredient distribution. With modern facilities and cutting-edge capabilities, we help some of the world’s most trusted brands deliver products that make a difference in people’s lives.

With a strong focus on growth, innovation, and excellence, Select Custom Solutions offers opportunities to be part of meaningful work that impacts industries worldwide. Whether you’re working hands-on in manufacturing or supporting operations, your contributions help drive the future of food and nutrition.

We’re proud to be partnered with Select Milk Producers, one of the nation’s most progressive dairy cooperatives. With over 110 family-owned dairies and multiple processing plants and joint ventures nationwide, our partnership connects us to a powerful network driving the future of food and nutrition.

Join us—and help shape what’s next.

What this role is all about:
We are looking for an IT Applications Manager near La Crosse, WI.

*To be considered, applicants must currently reside within 90 miles of La Crosse, WI. *

Location: This role can be primarily hybrid/remote but would require occasional onsite days.

Schedule: Monday – Friday, regular business hours + on call/weekends as projects dictate

The IT Applications Manager is responsible for the planning, development, support, and enhancement of the organization’s business applications, including the ERP system, custom in-house applications, other off-the-shelf business applications, and reporting solutions. This role leads and supervises the applications and development team members, providing direction, coaching, and career development. Working alongside the infrastructure and project management teams and partnering with business owners, the IT Applications Manager ensures that applications, data, and reporting platforms are reliable, secure, and aligned with the current and future needs of the business and oversees development projects from requirements through deployment and operations support.

This list of duties and responsibilities is not all-inclusive and may be expanded to include other duties and responsibilities, as management may deem necessary from time to time.

Where you’ll be working:
Our La Crosse, WI, plant is home to approximately 330 employees. This facility supplies the food, beverage, and nutritional industries with innovative functional ingredients and superior quality contract manufacturing services.

La Crosse, WI, is nestled between the Mississippi River and the rolling river bluffs. This town is home to a plethora of colleges, high-quality health care, community events, and cultural opportunities. If you want to enjoy outdoor activities there are many opportunities, such as hiking, cycling, skiing, and boating. The town hosts multiple events annually and is famously known for their Oktoberfest celebration as well as offering a minor league baseball team. Visit the La Crosse Chamber site https://www.lacrossechamber.com/ for more information on local events.

AA/EEO – Minority/Female/Disability/Veteran/Sexual Orientation/Gender Identity